ANOVA PANCAN result package

Francesco Iorio, EMBL - European Bioinformatics Institute
result parsing started on 2016-03-31 19:01:06
iorio@ebi.ac.uk


Drug Domain: GDSC1000_paper_set, Analysis Domain: panCancer


Individual drug analysis: 1009


Drug details and screening numbers

Drug Name: ATRA
Drug ID: 1009
Synonyms: Tretinoin
Brand name: Vesanoid
Target: Retinoic acid and retinoid X receptor agonist

Number of cell lines screened: 840
Screening concentration range(s): 0.0390625 to 10 uM


Statistically significant associations identified = 5
association id
FEATURE
Drug id
Propr
Public
Drug Name
Drug Target
N FEATURE pos
N FEATURE neg
log max Conc tested
FEATURE neg logIC50 MEAN
FEATURE pos logIC50 MEAN
FEATURE deltaMEAN IC50
FEATURE IC50 effectSize
FEATURE neg Glass delta
FEATURE pos Glass delta
ANOVA FEATURE pval
Tissue ANOVA pval
MSI ANOVA pval
ANOVA FEATURE FDR %
a17
CDKN1B_mut
1009
1
1
ATRA
Retinoic acid and retinoid X receptor agonist
5
832
2.3
3.92
0.0304
-3.89
3 **
3.1 **
1.4 *
2.9e-10
3.35e-32
2.03e-01
0.00028
a191
gain_cnaPANCAN280_(ARID4B,FH)
1009
1
1
ATRA
Retinoic acid and retinoid X receptor agonist
51
786
2.3
3.85
4.63
0.776
0.6 .
0.59 .
0.92 .
7.31e-05
4.12e-31
2.1e-01
6.3
a228
loss_cnaPANCAN293
1009
1
1
ATRA
Retinoic acid and retinoid X receptor agonist
16
821
2.3
3.88
4.8
0.911
0.7 .
0.69 .
1.2 *
1.22e-04
4.55e-31
2.1e-01
8.8
a344
gain_cnaPANCAN236
1009
1
1
ATRA
Retinoic acid and retinoid X receptor agonist
9
828
2.3
3.91
2.65
-1.26
0.97 .
0.98 .
0.48
3.37e-04
5.54e-31
2.11e-01
16
a356
loss_cnaPANCAN290
1009
1
1
ATRA
Retinoic acid and retinoid X receptor agonist
14
823
2.3
3.88
4.92
1.03
0.79 .
0.79 .
2 **
3.62e-04
5.62e-31
2.11e-01
17


All-tests volcano plot