ANOVA PANCAN result package

Francesco Iorio, EMBL - European Bioinformatics Institute
result parsing started on 2016-03-31 19:01:42
iorio@ebi.ac.uk


Drug Domain: GDSC1000_paper_set, Analysis Domain: panCancer


Individual Feature analysis: loss_cnaPANCAN233


Feature details and cell panel numbers

Binary feature equal to 1 for samples having the genomic region(s) cnaPANCAN233 deleted (see genomic region decoding file for further infos on this region)

Number of cell lines positive for this feature: 54


Statistically significant associations identified = 6
association id
FEATURE
Drug id
Propr
Public
Drug Name
Drug Target
N FEATURE pos
N FEATURE neg
log max Conc tested
FEATURE neg logIC50 MEAN
FEATURE pos logIC50 MEAN
FEATURE deltaMEAN IC50
FEATURE IC50 effectSize
FEATURE neg Glass delta
FEATURE pos Glass delta
ANOVA FEATURE pval
Tissue ANOVA pval
MSI ANOVA pval
ANOVA FEATURE FDR %
a106
loss_cnaPANCAN233
208
1
1
SB-715992
KIF11
48
874
-2.06
-1.84
-0.573
1.26
0.72 .
0.72 .
0.76 .
1.66e-05
1.18e-33
1.87e-02
2.6
a145
loss_cnaPANCAN233
221
1
1
TAK-715
p38a
48
876
3.00, 2.33
4.13
4.92
0.791
0.67 .
0.67 .
0.72 .
3.56e-05
3.89e-54
2.31e-01
4.1
a242
loss_cnaPANCAN233
157
1
1
JNK-9L
JNK
45
836
1.63
-0.304
0.31
0.614
0.58 .
0.59 .
0.46
1.41e-04
2.1e-06
1.59e-02
9.6
a367
loss_cnaPANCAN233
330
1
1
XMD13-2
RIPK
47
873
2.33
3.32
4.15
0.831
0.63 .
0.63 .
0.7 .
3.73e-04
5.88e-57
7.48e-01
17
a466
loss_cnaPANCAN233
333
1
1
T0901317
LXR
47
867
2.33
4.29
4.92
0.636
0.6 .
0.59 .
0.78 .
6.08e-04
1.91e-68
1.55e-01
22
a515
loss_cnaPANCAN233
204
1
1
Tipifarnib
Farnesyl-transferase (FNTA)
45
825
2.77
1.59
2.52
0.937
0.57 .
0.56 .
0.6 .
7.65e-04
4.95e-06
5.2e-02
25


All-tests volcano plot