ANOVA PANCAN result package

Francesco Iorio, EMBL - European Bioinformatics Institute
result parsing started on 2016-03-31 19:01:18
iorio@ebi.ac.uk


Drug Domain: GDSC1000_paper_set, Analysis Domain: panCancer


Individual Feature analysis: BRAF_mut


Feature details and cell panel numbers

Binary feature equal to 1 for samples harboring mutations in BRAF

Number of cell lines positive for this feature: 84


Statistically significant associations identified = 15
association id
FEATURE
Drug id
Propr
Public
Drug Name
Drug Target
N FEATURE pos
N FEATURE neg
log max Conc tested
FEATURE neg logIC50 MEAN
FEATURE pos logIC50 MEAN
FEATURE deltaMEAN IC50
FEATURE IC50 effectSize
FEATURE neg Glass delta
FEATURE pos Glass delta
ANOVA FEATURE pval
Tissue ANOVA pval
MSI ANOVA pval
ANOVA FEATURE FDR %
a2
BRAF_mut
1373
1
1
Dabrafenib
BRAF
72
798
2.3
3.62
-0.659
-4.28
2.7 **
3.1 **
1.4 *
8.8e-45
1.26e-81
8.3e-02
7.3e-38
a4
BRAF_mut
1371
1
1
PLX4720 (rescreen)
BRAF
81
834
2.3
4.18
2.06
-2.12
2 **
2.2 **
1.2 *
1.17e-29
3.79e-58
1.52e-01
4.8e-23
a5
BRAF_mut
1036
1
1
PLX4720
BRAF
69
776
2.3
4
1.77
-2.23
1.9 *
2.1 **
1.2 *
1.01e-22
1.18e-45
7.04e-01
3.3e-16
a6
BRAF_mut
1061
1
1
SB590885
BRAF
65
761
1.61
3.78
1.81
-1.98
1.9 *
2.2 **
1 *
6.35e-18
6.21e-44
8.74e-01
1.7e-11
a12
BRAF_mut
1242
1
1
(5Z)-7-Oxozeaenol
MAP3K7 (TAK1)
79
834
2.3
0.992
-0.879
-1.87
1.4 *
1.5 *
0.98 .
7.4e-11
7.5e-47
6.06e-01
1e-04
a34
BRAF_mut
262
1
1
VX-11e
ERK
78
841
1.63
2.88
1.61
-1.27
0.89 .
0.91 .
0.73 .
2.37e-08
7.35e-34
8.12e-01
0.012
a46
BRAF_mut
1498
1
1
AZD6244
MAP2K1 (MEK1), MAP2K2 (MEK2)
79
839
1.39
1.84
-0.371
-2.21
1.4 *
1.4 *
1.1 *
1.57e-07
6.7e-55
6.06e-02
0.056
a82
BRAF_mut
29
1
1
AZ628
BRAF
29
374
1.39
1.84
-0.574
-2.41
1.4 *
1.5 *
0.98 .
4.57e-06
1.54e-21
1.44e-01
0.92
a89
BRAF_mut
263
1
1
FR-180204
ERK
78
841
3
4.93
4.63
-0.302
0.34
0.35
0.33
7.29e-06
7.62e-37
7.83e-01
1.3
a95
BRAF_mut
1015
1
1
CI-1040
MAP2K1 (MEK1), MAP2K2 (MEK2)
70
766
2.3
2.38
0.711
-1.67
1.2 *
1.2 *
1.1 *
8.68e-06
1.74e-38
2.61e-02
1.5
a104
BRAF_mut
1526
1
1
RDEA119 (rescreen)
MAP2K1 (MEK1), MAP2K2 (MEK2)
75
800
1.61
1.88
-0.236
-2.12
1.3 *
1.4 *
1.2 *
1.56e-05
4.38e-62
1.68e-01
2.5
a111
BRAF_mut
295
1
1
NVP-BHG712
EPHB4
78
841
2.33
3.06
2.29
-0.77
0.47
0.46
0.53 .
1.73e-05
9.85e-66
4.76e-01
2.6
a125
BRAF_mut
1372
1
1
Trametinib
MAP2K1 (MEK1), MAP2K2 (MEK2)
76
817
0
-0.792
-3.64
-2.85
1.2 *
1.2 *
1.1 *
2.21e-05
1.91e-62
2.18e-01
2.9
a450
BRAF_mut
1014
1
1
RDEA119
MAP2K1 (MEK1), MAP2K2 (MEK2)
67
770
1.61
1.69
-0.295
-1.99
1.1 *
1.1 *
1.1 *
5.77e-04
7.95e-51
1.05e-01
21
a527
BRAF_mut
1236
1
1
UNC0638
G9a(EHMT2), GLP(EHMT1)
82
846
3
3.25
2.81
-0.444
0.32
0.32
0.37
7.93e-04
2.7e-41
4.27e-01
25


All-tests volcano plot