ANOVA BRCA result package

Francesco Iorio, EMBL - European Bioinformatics Institute
result parsing started on 2016-04-08 12:06:35
iorio@ebi.ac.uk


Drug Domain: GDSC1000_paper_set, Analysis Domain: BRCA specific


MANOVA Results Summary
association id
FEATURE
Drug id
Propr
Public
Drug Name
Drug Target
N FEATURE pos
N FEATURE neg
log max Conc tested
FEATURE pos logIC50 MEAN
FEATURE neg logIC50 MEAN
FEATURE deltaMEAN IC50
FEATURE IC50 effectSize
FEATURE neg Glass delta
FEATURE pos Glass delta
ANOVA FEATURE pval
ANOVA Tissue pval
ANOVA MSI pval
ANOVA FEATURE %FDR
a1
gain_cnaBRCA26_(CDK12,ERBB2,MED24)
1377
1
Afatinib (rescreen)
ERBB2, EGFR
15
32
2.3
0.704
3.83
-3.13
2.3 **
2.3 **
2.4 **
2.07e-09
NA
NA
0.0024
a2
gain_cnaBRCA27_(CLTC,PPM1D)
119
1
Lapatinib
ERBB2, EGFR
3
10
0.693
-2.2
2.54
-4.74
5.7 **
6.1 **
4.6 **
2.92e-06
NA
NA
1.7
a3
gain_cnaBRCA26_(CDK12,ERBB2,MED24)
255
1
CP724714
ERBB2
14
34
2.33
2.27
4.44
-2.17
1.6 *
2.2 **
1.1 *
6.72e-06
NA
NA
2
a4
gain_cnaBRCA30_(CRNKL1,FOXA2)
204
1
Tipifarnib
Farnesyl-transferase (FNTA)
5
43
2.77
4.24
1.31
2.93
2.4 **
2.5 **
1.7 *
6.77e-06
NA
NA
2
a5
gain_cnaBRCA39_(FOXA1,NKX2-1,PSMA6)
159
1
HG-6-64-1
BRAFV600E, TAK, MAP4K5
7
39
1.63
4.09
1.55
2.54
1.9 *
1.9 *
2.3 **
2.3e-05
NA
NA
5.1
a6
loss_cnaBRCA33
206
1
Ruxolitinib
JAK1, JAK2, TYK2
6
43
1.6563, 0.0237
3.4
4.51
-1.11
2 **
2.2 **
1.3 *
2.63e-05
NA
NA
5.1
a7
gain_cnaBRCA26_(CDK12,ERBB2,MED24)
1032
1
Afatinib
ERBB2, EGFR
15
30
-0.693
-1.18
1.03
-2.2
1.5 *
1.5 *
1.4 *
3.54e-05
NA
NA
5.9
a8
loss_cnaBRCA34
1011
1
ABT-263
BCL2, BCL2L1, BCL2L2
5
38
0.693
-0.937
2.03
-2.96
2.2 **
2.2 **
1.6 *
5.06e-05
NA
NA
7.3
a9
ASH1L_mut
147
1
NSC-87877
PTPN6 (SHP-1), PTPN11 (SHP-2)
3
44
2.77
2.94
5.15
-2.21
2.5 **
2.6 **
1.6 *
1.08e-04
NA
NA
14
a10
gain_cnaBRCA47_(EGFR)
1114
1
Cetuximab
EGFR
6
39
4.19
5.1
6.46
-1.37
1.8 *
2.2 **
1 *
1.42e-04
NA
NA
16
a11
gain_cnaBRCA30_(CRNKL1,FOXA2)
180
1
Thapsigargin
sarco-endoplasmic reticulum Ca2+-ATPases
4
41
-0.669
0.617
-3.89
4.5
2.2 **
2.2 **
2.2 **
1.53e-04
NA
NA
16
a12
gain_cnaBRCA26_(CDK12,ERBB2,MED24)
119
1
Lapatinib
ERBB2, EGFR
4
9
0.693
-1.31
2.66
-3.97
3.3 **
5.6 **
2 **
1.8e-04
NA
NA
16
a13
gain_cnaBRCA39_(FOXA1,NKX2-1,PSMA6)
204
1
Tipifarnib
Farnesyl-transferase (FNTA)
7
41
2.77
3.48
1.3
2.18
1.7 *
1.8 *
1.2 *
1.81e-04
NA
NA
16
a14
ASH1L_mut
170
1
Shikonin
unknown
3
44
2.77
-2.3
0.161
-2.47
2.4 **
2.4 **
11 **
2.13e-04
NA
NA
18
a15
gain_cnaBRCA26_(CDK12,ERBB2,MED24)
1003
1
Camptothecin
TOP1
15
30
-2.3
-1.37
-3.11
1.73
1.3 *
1.5 *
1 .
2.35e-04
NA
NA
18
a16
loss_cnaBRCA32_(PABPC3,SACS,ZMYM2)
53
1
CGP-60474
CDK1,CDK2,CDK5,CDK7,CDK9
3
9
-1.36
0.442
-2.41
2.86
3.7 **
4.6 **
2.4 **
2.46e-04
NA
NA
18
a17
gain_cnaBRCA27_(CLTC,PPM1D)
255
1
CP724714
ERBB2
9
39
2.33
2.08
4.2
-2.12
1.5 *
1.9 *
0.87 .
2.62e-04
NA
NA
18
a18
loss_cnaBRCA33
312
1
AV-951
VEGFR
6
42
-2.06
-0.207
0.752
-0.959
1.7 *
1.8 *
1.2 *
2.85e-04
NA
NA
18
a19
loss_cnaBRCA32_(PABPC3,SACS,ZMYM2)
41
1
S-Trityl-L-cysteine
KIF11
3
9
1.63
3.53
0.457
3.07
3.5 **
3.4 **
4 **
3.38e-04
NA
NA
19
a20
POLR2B_mut
1218
1
JQ1
BRD2, BRD3, BRD4
3
43
0
1.13
2.55
-1.42
2.3 **
2.3 **
3.9 **
3.39e-04
NA
NA
19
a21
loss_cnaBRCA32_(PABPC3,SACS,ZMYM2)
88
1
MS-275
HDAC
5
9
1.61
2.99
0.111
2.88
2.7 **
3.9 **
1.9 *
3.91e-04
NA
NA
19
a22
gain_cnaBRCA31
1268
1
XAV 939
TNKS1 (tankyrase-1)
15
32
1.61
4.33
3.35
0.985
1.2 *
1.2 *
1.3 *
3.94e-04
NA
NA
19
a23
gain_cnaBRCA62
301
1
PHA-793887
CDK-pan
10
38
2.33
1.38
3.33
-1.95
1.4 *
1.5 *
1 *
4.12e-04
NA
NA
19
a24
gain_cnaBRCA48
235
1
QL-XII-47
BTK, BMX
5
44
2.33
3.84
1.47
2.37
1.8 *
1.8 *
2 **
4.3e-04
NA
NA
19
a25
CDH1_mut
150
1
Bicalutamide
ANDR (androgen receptor)
4
44
0.0237
1.77
2.85
-1.09
2 *
1.9 *
2.7 **
4.34e-04
NA
NA
19
a26
gain_cnaBRCA30_(CRNKL1,FOXA2)
140
1
Vinorelbine
Microtubules
5
42
-2.75
-1.28
-3.88
2.59
1.8 *
1.8 *
2 *
4.38e-04
NA
NA
19
a27
PTEN_mut
1030
1
KU-55933
ATM
5
37
2.3
2.94
4.39
-1.45
1.8 *
1.8 *
2.8 **
4.5e-04
NA
NA
19
a28
gain_cnaBRCA30_(CRNKL1,FOXA2)
1375
1
Temozolomide
DNA akylating agent
5
41
3.4
6.87
5.78
1.09
1.8 *
1.8 *
1.5 *
4.74e-04
NA
NA
19
a29
gain_cnaBRCA30_(CRNKL1,FOXA2)
201
1
Epothilone B
Microtubules
5
43
-3.44
-1.71
-4.53
2.82
1.8 *
1.8 *
1.9 *
5.01e-04
NA
NA
19
a30
ASH1L_mut
167
1
OSU-03012
PDPK1 (PDK1)
3
45
2.77
0.062
2.39
-2.33
2.2 **
2.3 **
1.8 *
5.03e-04
NA
NA
19
a31
gain_cnaBRCA30_(CRNKL1,FOXA2)
1268
1
XAV 939
TNKS1 (tankyrase-1)
5
42
1.61
4.97
3.51
1.46
1.8 *
1.8 *
1.8 *
5.27e-04
NA
NA
20
a32
gain_cnaBRCA30_(CRNKL1,FOXA2)
167
1
OSU-03012
PDPK1 (PDK1)
5
43
2.77
3.89
2.06
1.83
1.7 *
1.8 *
1.4 *
5.71e-04
NA
NA
21
a33
gain_cnaBRCA39_(FOXA1,NKX2-1,PSMA6)
184
1
BMS-754807
IGF1R
7
41
0.94
3.54
1.3
2.24
1.5 *
1.4 *
2.5 **
6.15e-04
NA
NA
22
a34
loss_cnaBRCA18
275
1
I-BET
BRD2, BRD3, BRD4
16
33
3
3.13
4.48
-1.35
1.1 *
1.1 *
1.3 *
6.4e-04
NA
NA
22
a35
gain_cnaBRCA64_(SDHC)
224
1
AS605240
PI3Kgamma
8
41
3.00, 2.33
1.61
3.59
-1.98
1.4 *
1.8 *
0.78 .
6.64e-04
NA
NA
22
a36
gain_cnaBRCA31
1526
1
RDEA119 (rescreen)
MAP2K1 (MEK1), MAP2K2 (MEK2)
13
30
1.61
4.07
2.46
1.61
1.2 *
1.1 *
1.9 *
6.69e-04
NA
NA
22
a37
gain_cnaBRCA62
1057
1
NVP-BEZ235
PI3K (Class 1) and MTORC1/2
7
36
-1.386, 0.693
-1.16
-2.43
1.26
1.5 *
1.6 *
1.3 *
6.89e-04
NA
NA
22
a38
gain_cnaBRCA30_(CRNKL1,FOXA2)
1020
1
Lenalidomide
TNFA
5
40
1.61
5.22
4.13
1.08
1.7 *
1.8 *
1.4 *
7.3e-04
NA
NA
22
a39
loss_cnaBRCA18
306
1
TG101348
JAK2
15
33
2.33
2.35
3.62
-1.28
1.1 *
1 *
1.4 *
8.1e-04
NA
NA
24
a40
loss_cnaBRCA33
1011
1
ABT-263
BCL2, BCL2L1, BCL2L2
5
38
0.693
-0.548
1.98
-2.52
1.7 *
1.7 *
1.7 *
8.19e-04
NA
NA
24
a41
gain_cnaBRCA27_(CLTC,PPM1D)
293
1
MP470
PDGFR
9
39
3
1.94
3.9
-1.96
1.3 *
1.5 *
0.97 .
8.69e-04
NA
NA
25
a42
gain_cnaBRCA47_(EGFR)
1010
1
Gefitinib
EGFR
7
38
-0.693
0.256
1.61
-1.35
1.5 *
1.4 *
1.6 *
8.94e-04
NA
NA
25